Projects/Code

TS2CG 2.0 is a tool to create initial membrane systems in arbitrary shapes. The program also allows the easy lateral organization of both lipids and proteins. TS2CG is implemented in C++ and includes two separate scripts. Pointillism and CG Membrane Builder. A custom python framework allows the manipulation of membrane to fine-tune lateral organization of lipids and proteins. The repository is available here with the documentation for the C++ programs. The documentation for the python framework can be found here

SiMBols SiMBols is a python package designed to make similarity measures easily accessible for biological systems and to compare spatio-temporal data. The package offers a unified approach to calculate the Frechet distance, the weak Frechet distance, the Hausdorff distance, dynamic time warping, Wasserstein distance, Kullback-Leibler diivergence, longest common subsequence and an approach based on difference distance matrices.